Detailed information of SNP:
|
SNP ID:
sf0921567270(Gbrowse)
Chromosome: chr09 Position: 21567270 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 82.94% | 17.06% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 479 | 60.96% | 39.04% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 326 | 76.38% | 23.62% |
| Tropical Japonica | 87 | 20.69% | 79.31% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921567270 | G->A | LOC_Os09g37340(LOC_Os09g37340.1) | Non-Synonymous SNP |