Detailed information of SNP:
|
SNP ID:
sf0921644998(Gbrowse)
Chromosome: chr09 Position: 21644998 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 54.36% | 45.64% |
| All Indica | 790 | 88.61% | 11.39% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 66 | 74.24% | 25.76% |
| Indica I | 372 | 94.35% | 5.65% |
| Indica II | 210 | 75.71% | 24.29% |
| Indica Intermediate | 208 | 91.35% | 8.65% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921644998 | G->T | INTERGENIC | None |