Detailed information of SNP:
|
SNP ID:
sf0921699481(Gbrowse)
Chromosome: chr09 Position: 21699481 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 97.67% | 2.33% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 93.76% | 6.24% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 72.34% | 27.66% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921699481 | G->A | LOC_Os09g37650(LOC_Os09g37650.1) | Non-Synonymous SNP |
| sf0921699481 | G->A | LOC_Os09g37650(LOC_Os09g37650.2) | Non-Synonymous SNP |