Detailed information of SNP:
|
SNP ID:
sf0921835007(Gbrowse)
Chromosome: chr09 Position: 21835007 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 61.87% | 38.13% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921835007 | G->C | LOC_Os09g37870(LOC_Os09g37870.1) | Non-Synonymous SNP |