Detailed information of SNP:
|
SNP ID:
sf0921851613(Gbrowse)
Chromosome: chr09 Position: 21851613 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.36% | 42.64% |
| All Indica | 799 | 93.49% | 6.51% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921851613 | G->A | LOC_Os09g37900(LOC_Os09g37900.1) | Non-Synonymous SNP |