Detailed information of SNP:
|
SNP ID:
sf0921889461(Gbrowse)
Chromosome: chr09 Position: 21889461 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 91.03% | 8.97% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 486 | 75.51% | 24.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 89.12% | 10.88% |
| Tropical Japonica | 90 | 31.11% | 68.89% |
| Japonica Intermediate | 65 | 67.69% | 32.31% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921889461 | C->T | INTERGENIC | None |