Detailed information of SNP:
|
SNP ID:
sf0921953701(Gbrowse)
Chromosome: chr09 Position: 21953701 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1338 | 51.42% | 48.58% |
| All Indica | 743 | 15.48% | 84.52% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 50 | 72.00% | 28.00% |
| Indica I | 340 | 7.94% | 92.06% |
| Indica II | 202 | 27.23% | 72.77% |
| Indica Intermediate | 201 | 16.42% | 83.58% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 34 | 79.41% | 20.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921953701 | C->T | INTERGENIC | None |