Detailed information of SNP:
|
SNP ID:
sf0921975530(Gbrowse)
Chromosome: chr09 Position: 21975530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 51.34% | 48.66% |
| All Indica | 796 | 87.69% | 12.31% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 372 | 84.14% | 15.86% |
| Indica II | 213 | 89.20% | 10.80% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 19.05% | 80.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921975530 | C->T | INTERGENIC | None |