Detailed information of SNP:
|
SNP ID:
sf0921996643(Gbrowse)
Chromosome: chr09 Position: 21996643 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 97.21% | 2.79% |
| All Indica | 782 | 95.27% | 4.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 205 | 87.80% | 12.20% |
| Indica Intermediate | 205 | 95.12% | 4.88% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0921996643 | A->G | INTERGENIC | None |