Detailed information of SNP:
|
SNP ID:
sf0922012914(Gbrowse)
Chromosome: chr09 Position: 22012914 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 59.08% | 40.92% |
| All Indica | 796 | 97.11% | 2.89% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 210 | 91.90% | 8.10% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922012914 | C->T | INTERGENIC | None |