Detailed information of SNP:
|
SNP ID:
sf0922057211(Gbrowse)
Chromosome: chr09 Position: 22057211 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 59.21% | 40.79% |
| All Indica | 799 | 96.62% | 3.38% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922057211 | C->T | INTERGENIC | None |