Detailed information of SNP:
|
SNP ID:
sf0922071538(Gbrowse)
Chromosome: chr09 Position: 22071538 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 60.33% | 39.67% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 65 | 72.31% | 27.69% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922071538 | A->C | INTERGENIC | None |