Detailed information of SNP:
|
SNP ID:
sf0922079255(Gbrowse)
Chromosome: chr09 Position: 22079255 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.51% | 42.49% |
| All Indica | 799 | 28.91% | 71.09% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 375 | 32.80% | 67.20% |
| Indica II | 213 | 19.72% | 80.28% |
| Indica Intermediate | 211 | 31.28% | 68.72% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922079255 | G->A | INTERGENIC | None |