Detailed information of SNP:
|
SNP ID:
sf0922081242(Gbrowse)
Chromosome: chr09 Position: 22081242 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 55.68% | 44.32% |
| All Indica | 798 | 91.60% | 8.40% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 59.70% | 40.30% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 89.62% | 10.38% |
| Indica Intermediate | 211 | 87.20% | 12.80% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922081242 | T->A | INTERGENIC | None |