Detailed information of SNP:
|
SNP ID:
sf0922095375(Gbrowse)
Chromosome: chr09 Position: 22095375 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 56.04% | 43.96% |
| All Indica | 781 | 28.04% | 71.96% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 33.33% | 66.67% |
| Indica II | 197 | 13.20% | 86.80% |
| Indica Intermediate | 209 | 32.54% | 67.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922095375 | C->A | INTERGENIC | None |