Detailed information of SNP:
|
SNP ID:
sf0922140758(Gbrowse)
Chromosome: chr09 Position: 22140758 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.45% | 43.55% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922140758 | G->A | LOC_Os09g38470(LOC_Os09g38470.1) | Non-Synonymous SNP |