Detailed information of SNP:
|
SNP ID:
sf0922141097(Gbrowse)
Chromosome: chr09 Position: 22141097 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.24% | 43.76% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 93.07% | 6.93% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922141097 | T->C | LOC_Os09g38470(LOC_Os09g38470.1) | INTRON |