Detailed information of SNP:
|
SNP ID:
sf0922141417(Gbrowse)
Chromosome: chr09 Position: 22141417 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 50.92% | 49.08% |
| All Indica | 792 | 83.33% | 16.67% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 374 | 89.30% | 10.70% |
| Indica II | 210 | 74.29% | 25.71% |
| Indica Intermediate | 208 | 81.73% | 18.27% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922141417 | T->A | LOC_Os09g38470(LOC_Os09g38470.1) | INTRON |