Detailed information of SNP:
|
SNP ID:
sf0922155582(Gbrowse)
Chromosome: chr09 Position: 22155582 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 59.16% | 40.84% |
| All Indica | 795 | 31.19% | 68.81% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 373 | 41.29% | 58.71% |
| Indica II | 213 | 21.13% | 78.87% |
| Indica Intermediate | 209 | 23.44% | 76.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922155582 | C->A | INTERGENIC | None |