Detailed information of SNP:
|
SNP ID:
sf0922171631(Gbrowse)
Chromosome: chr09 Position: 22171631 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.98% | 42.02% |
| All Indica | 799 | 95.24% | 4.76% |
| All Japonica | 495 | 0.40% | 99.60% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 34.15% | 65.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922171631 | G->T | LOC_Os09g38530(LOC_Os09g38530.1) | UTR_3_PRIME |