Detailed information of SNP:
|
SNP ID:
sf0922182885(Gbrowse)
Chromosome: chr09 Position: 22182885 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 61.99% | 38.01% |
| All Indica | 798 | 36.22% | 63.78% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 40.00% | 60.00% |
| Indica II | 213 | 24.88% | 75.12% |
| Indica Intermediate | 210 | 40.95% | 59.05% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922182885 | A->G | INTERGENIC | None |