Detailed information of SNP:
|
SNP ID:
sf0922186452(Gbrowse)
Chromosome: chr09 Position: 22186452 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 78.94% | 21.06% |
| All Indica | 796 | 66.96% | 33.04% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 64.80% | 35.20% |
| Indica II | 213 | 77.00% | 23.00% |
| Indica Intermediate | 208 | 60.58% | 39.42% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922186452 | C->T | INTERGENIC | None |