Detailed information of SNP:
|
SNP ID:
sf0922186711(Gbrowse)
Chromosome: chr09 Position: 22186711 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.30% | 36.70% |
| All Indica | 797 | 37.89% | 62.11% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 36.80% | 63.20% |
| Indica II | 213 | 35.21% | 64.79% |
| Indica Intermediate | 209 | 42.58% | 57.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922186711 | C->T | INTERGENIC | None |