Detailed information of SNP:
|
SNP ID:
sf0922187015(Gbrowse)
Chromosome: chr09 Position: 22187015 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1382 | 77.93% | 22.07% |
| All Indica | 764 | 64.66% | 35.34% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 366 | 63.39% | 36.61% |
| Indica II | 189 | 73.02% | 26.98% |
| Indica Intermediate | 209 | 59.33% | 40.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922187015 | T->A | INTERGENIC | None |