Detailed information of SNP:
|
SNP ID:
sf0922201845(Gbrowse)
Chromosome: chr09 Position: 22201845 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 75.78% | 24.22% |
| All Indica | 757 | 57.99% | 42.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 349 | 54.15% | 45.85% |
| Indica II | 206 | 61.17% | 38.83% |
| Indica Intermediate | 202 | 61.39% | 38.61% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922201845 | C->G | LOC_Os09g38600(LOC_Os09g38600.1) | Synonymous |