Detailed information of SNP:
|
SNP ID:
sf0922205152(Gbrowse)
Chromosome: chr09 Position: 22205152 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 95.84% | 4.16% |
| All Indica | 798 | 96.24% | 3.76% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 89.15% | 10.85% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922205152 | T->C | INTERGENIC | None |