Detailed information of SNP:
|
SNP ID:
sf0922210397(Gbrowse)
Chromosome: chr09 Position: 22210397 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 87.92% | 12.08% |
| All Indica | 795 | 79.50% | 20.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 67.02% | 32.98% |
| Indica II | 212 | 98.11% | 1.89% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922210397 | A->G | INTERGENIC | None |