Detailed information of SNP:
|
SNP ID:
sf0922220655(Gbrowse)
Chromosome: chr09 Position: 22220655 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 56.93% | 43.07% |
| All Indica | 795 | 26.92% | 73.08% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 34.22% | 65.78% |
| Indica II | 213 | 15.02% | 84.98% |
| Indica Intermediate | 208 | 25.96% | 74.04% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922220655 | C->T | LOC_Os09g38630(LOC_Os09g38630.1) | Synonymous |