Detailed information of SNP:
|
SNP ID:
sf0922222293(Gbrowse)
Chromosome: chr09 Position: 22222293 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 57.46% | 42.54% |
| All Indica | 796 | 27.76% | 72.24% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 374 | 34.76% | 65.24% |
| Indica II | 212 | 15.09% | 84.91% |
| Indica Intermediate | 210 | 28.10% | 71.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922222293 | T->C | INTERGENIC | None |