Detailed information of SNP:
|
SNP ID:
sf0922275228(Gbrowse)
Chromosome: chr09 Position: 22275228 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 94.50% | 5.50% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 90.34% | 9.66% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922275228 | G->A | LOC_Os09g38768(LOC_Os09g38768.1) | INTRON |
| sf0922275228 | G->A | LOC_Os09g38768(LOC_Os09g38768.2) | INTRON |