Detailed information of SNP:
|
SNP ID:
sf0922282153(Gbrowse)
Chromosome: chr09 Position: 22282153 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 52.05% | 47.95% |
| All Indica | 794 | 89.55% | 10.45% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 372 | 95.97% | 4.03% |
| Indica II | 213 | 82.16% | 17.84% |
| Indica Intermediate | 209 | 85.65% | 14.35% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922282153 | A->G | LOC_Os09g38777(LOC_Os09g38777.1) | INTRON |