Detailed information of SNP:
|
SNP ID:
sf0922290468(Gbrowse)
Chromosome: chr09 Position: 22290468 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.99% | 41.01% |
| All Indica | 799 | 28.66% | 71.34% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 23.47% | 76.53% |
| Indica II | 213 | 25.82% | 74.18% |
| Indica Intermediate | 211 | 40.76% | 59.24% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922290468 | C->T | LOC_Os09g38790(LOC_Os09g38790.1) | INTRON |
| sf0922290468 | C->T | LOC_Os09g38790(LOC_Os09g38790.2) | INTRON |
| sf0922290468 | C->T | LOC_Os09g38790(LOC_Os09g38790.3) | INTRON |