Detailed information of SNP:
|
SNP ID:
sf0922295179(Gbrowse)
Chromosome: chr09 Position: 22295179 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1376 | 86.63% | 13.37% |
| All Indica | 756 | 76.32% | 23.68% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 348 | 64.66% | 35.34% |
| Indica II | 206 | 87.86% | 12.14% |
| Indica Intermediate | 202 | 84.65% | 15.35% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922295179 | A->C | INTERGENIC | None |