Detailed information of SNP:
|
SNP ID:
sf0922303634(Gbrowse)
Chromosome: chr09 Position: 22303634 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1269 | 96.77% | 3.23% |
| All Indica | 651 | 93.86% | 6.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 281 | 89.32% | 10.68% |
| Indica II | 187 | 96.79% | 3.21% |
| Indica Intermediate | 183 | 97.81% | 2.19% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922303634 | A->C | LOC_Os09g38830(LOC_Os09g38830.1) | INTRON |