Detailed information of SNP:
|
SNP ID:
sf0922308548(Gbrowse)
Chromosome: chr09 Position: 22308548 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 97.94% | 2.06% |
| All Indica | 790 | 96.33% | 3.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 92.76% | 7.24% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 207 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922308548 | G->A | LOC_Os09g38834(LOC_Os09g38834.1) | Non-Synonymous SNP |