Detailed information of SNP:
|
SNP ID:
sf0922309837(Gbrowse)
Chromosome: chr09 Position: 22309837 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 88.12% | 11.88% |
| All Indica | 798 | 79.32% | 20.68% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 212 | 60.38% | 39.62% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922309837 | A->G | INTERGENIC | None |