Detailed information of SNP:
|
SNP ID:
sf0922311574(Gbrowse)
Chromosome: chr09 Position: 22311574 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 65.10% | 34.90% |
| All Indica | 792 | 43.31% | 56.69% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 59 | 61.02% | 38.98% |
| Indica I | 371 | 28.30% | 71.70% |
| Indica II | 211 | 55.45% | 44.55% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922311574 | A->T | LOC_Os09g38840(LOC_Os09g38840.1) | Non-Synonymous SNP |