Detailed information of SNP:
|
SNP ID:
sf0922315633(Gbrowse)
Chromosome: chr09 Position: 22315633 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1227 | 94.46% | 5.54% |
| All Indica | 609 | 89.33% | 10.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 259 | 84.17% | 15.83% |
| Indica II | 173 | 93.06% | 6.94% |
| Indica Intermediate | 177 | 93.22% | 6.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922315633 | G->A | LOC_Os09g38850(LOC_Os09g38850.1) | Non-Synonymous SNP |