Detailed information of SNP:
|
SNP ID:
sf0922325280(Gbrowse)
Chromosome: chr09 Position: 22325280 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1250 | 79.04% | 20.96% |
| All Indica | 638 | 66.77% | 33.23% |
| All Japonica | 494 | 99.39% | 0.61% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 350 | 74.86% | 25.14% |
| Indica II | 131 | 62.60% | 37.40% |
| Indica Intermediate | 157 | 52.23% | 47.77% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922325280 | A->G | LOC_Os09g38870(LOC_Os09g38870.1) | INTRON |