Detailed information of SNP:
|
SNP ID:
sf0922346227(Gbrowse)
Chromosome: chr09 Position: 22346227 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 96.43% | 3.57% |
| All Indica | 782 | 93.86% | 6.14% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922346227 | G->A | INTERGENIC | None |