Detailed information of SNP:
|
SNP ID:
sf0922358820(Gbrowse)
Chromosome: chr09 Position: 22358820 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 65.88% | 34.12% |
| All Indica | 789 | 41.44% | 58.56% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 372 | 27.69% | 72.31% |
| Indica II | 210 | 56.19% | 43.81% |
| Indica Intermediate | 207 | 51.21% | 48.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922358820 | G->T | LOC_Os09g38940(LOC_Os09g38940.1) | SNPs that introduce stop codons |