Detailed information of SNP:
|
SNP ID:
sf0922373477(Gbrowse)
Chromosome: chr09 Position: 22373477 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1394 | 72.31% | 27.69% |
| All Indica | 776 | 56.70% | 43.30% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 368 | 67.93% | 32.07% |
| Indica II | 207 | 46.86% | 53.14% |
| Indica Intermediate | 201 | 46.27% | 53.73% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922373477 | T->C | INTERGENIC | None |