Detailed information of SNP:
|
SNP ID:
sf0922374353(Gbrowse)
Chromosome: chr09 Position: 22374353 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 57.56% | 42.44% |
| All Indica | 797 | 95.11% | 4.89% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922374353 | G->C | INTERGENIC | None |