Detailed information of SNP:
|
SNP ID:
sf0922382615(Gbrowse)
Chromosome: chr09 Position: 22382615 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 92.74% | 7.26% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 84.98% | 15.02% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922382615 | T->C | LOC_Os09g38980(LOC_Os09g38980.2) | UTR_5_PRIME |
| sf0922382615 | T->C | LOC_Os09g38980(LOC_Os09g38980.1) | UTR_5_PRIME |