Detailed information of SNP:
|
SNP ID:
sf0922386512(Gbrowse)
Chromosome: chr09 Position: 22386512 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1398 | 98.28% | 1.72% |
| All Indica | 780 | 97.31% | 2.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 366 | 98.36% | 1.64% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 205 | 97.07% | 2.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922386512 | C->G | LOC_Os09g38980(LOC_Os09g38980.2) | UTR_3_PRIME |
| sf0922386512 | C->G | LOC_Os09g38980(LOC_Os09g38980.1) | UTR_3_PRIME |