Detailed information of SNP:
|
SNP ID:
sf0922392191(Gbrowse)
Chromosome: chr09 Position: 22392191 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 90.06% | 9.94% |
| All Indica | 788 | 83.50% | 16.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 370 | 81.89% | 18.11% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 207 | 81.16% | 18.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922392191 | A->C | LOC_Os09g39000(LOC_Os09g39000.1) | Non-Synonymous SNP |