Detailed information of SNP:
|
SNP ID:
sf0922397920(Gbrowse)
Chromosome: chr09 Position: 22397920 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 68.17% | 31.83% |
| All Indica | 782 | 43.99% | 56.01% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 29.87% | 70.13% |
| Indica II | 196 | 62.76% | 37.24% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922397920 | C->T | INTERGENIC | None |