Detailed information of SNP:
|
SNP ID:
sf0922403453(Gbrowse)
Chromosome: chr09 Position: 22403453 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 77.72% | 22.28% |
| All Indica | 797 | 68.51% | 31.49% |
| All Japonica | 495 | 99.19% | 0.81% |
| Aus | 67 | 28.36% | 71.64% |
| Indica I | 375 | 54.93% | 45.07% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 65.71% | 34.29% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922403453 | T->C | LOC_Os09g39020(LOC_Os09g39020.1) | Synonymous |