Detailed information of SNP:
|
SNP ID:
sf0922414732(Gbrowse)
Chromosome: chr09 Position: 22414732 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 61.75% | 38.25% |
| All Indica | 793 | 98.61% | 1.39% |
| All Japonica | 494 | 1.21% | 98.79% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 206 | 98.54% | 1.46% |
| Temperate Japonica | 332 | 1.81% | 98.19% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 37 | 56.76% | 43.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922414732 | C->T | INTERGENIC | None |