Detailed information of SNP:
|
SNP ID:
sf0922415007(Gbrowse)
Chromosome: chr09 Position: 22415007 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 74.10% | 25.90% |
| All Indica | 795 | 55.22% | 44.78% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 373 | 51.21% | 48.79% |
| Indica II | 213 | 56.81% | 43.19% |
| Indica Intermediate | 209 | 60.77% | 39.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0922415007 | T->C | INTERGENIC | None |